PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g002690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 312aa    MW: 35448.5 Da    PI: 8.0009
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g002690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.11.8e-3325130199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kv tpsdv+k++rlv+pk++ae++       +++++++  l +ed+sg+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d+ +
  Csa16g002690.1  25 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnstSNDSNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSGN 119
                     89****************************999666678899************************************************99888 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ ++r+
  Csa16g002690.1 120 KDKLYIDWRRR 130
                     999*****998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-4313136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-3222133IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-2623119No hitNo description
PROSITE profilePS5086314.57925131IPR003340B3 DNA binding domain
SMARTSM010199.5E-2625131IPR003340B3 DNA binding domain
PfamPF023621.0E-3025130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MMMNQEEEKP INEEASSSME REHMFDKVVT PSDVGKLNRL VIPKQHAERY FPLDNSTSND  60
SNKGLLLNFE DRSGNSWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFQRDSGNK  120
DKLYIDWRRR PKIPDHHHHH HHHQASYHHQ FAGAMFPRFY TFPHPQMPAN YESHNLYHRF  180
HQRDLGIGYY VRSMERTNPT AVIESVPVMM QRRAQVASRG EKRLRLFGVD MECGGGGGGG  240
GSVNSTEEES SSSGGSIPRG SVSMVGAGSL LQLRLVSSDD ESLVAMEAAS LEDHHFFTKK  300
GKSSLSFDLD T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-482213011117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8737321e-176FJ873732.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA2 (NGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468999.10.0PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2680.0NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLC3VMM30.0C3VMM3_ARATH; NGATHA2
STRINGAT3G61970.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-175B3 family protein